Thank you in advance for any help here

I have a few questions if someone can advise. I have been here in UK 10 years now.
6 years on Student
2 years on IGS Post study
and 2 years on EEA family member visa (my mrs is EEA national)
I haven't been outside UK for more then 5 months at a time in the last 6 years
My Mrs lives in London while i Live in Southampton because of Jobs. She just finished her 1 year contract recently and is looking for another job in london. We do see each other every weekend.
Q) Will this effect my application?
Q) As i am applying on the basis that i have been here in UK legally 10 years does the 5 years EEA family member clause come into play?
Any other advice out there or suggestions to help me smooth out this process?